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Congratulations on keeping your setup in great shape.
I'm also maximizing all the SATA and IDE ports; however, my combination is:
-six HDs in the Intel SATA ports. five are in both Raid0 and RAID5 modes for 12TB and 4TB respectively. One is an SSD where the Win7-64 OS resides.
-two HDs on the GSATA (Jmicron) ports, both in AHCI mode for 3TB each. These ports will not recognize a 3TB HD in RAID mode due to outdated drivers but they will recognize a 3TB drive in AHCI mode provided you have Win7 or higher.
-two DVD drives on the IDE port (also Jmicron) that have converters from IDE ribbon cable to SATA to mate with the DVD drives.
This makes a total of ten drives.
I'm not sure why the WD HD cannot be recognized. Is your OS win7-64 bit using NTFS?. Win7-32bit and older Windows as well as FAT32 will have lower limits. A search on the various hard drive capacity limits as a function of OS can be found online.
If you are on the Intel SATA ports, set it to RAID mode to try that mode out. You do not have to configure them into a RAID array. Install the Intel RST RAID driver first in the OS or the OS won't recognize the full 3TB drive capacity.